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Mouse V1 multiplane two-photon imaging with Xenium spatial transcriptomics of the same neurons

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ID: 002015DRAFT
Contact Arkhipov, Anton
File Count 36
Size 127.8 GB
Created September 28, 2026
Last update October 5, 2026
Licenses: spdx:CC-BY-4.0
Access Information: dandi:OpenAccess (embargoed until October 5, 2026)

This dataset connects the activity of neurons in mouse primary visual cortex (VISp) to their molecular cell type.

We recorded the activity of neurons in awake, head-fixed mice with a multiplane two-photon mesoscope. We recorded 8 imaging planes at about 10.7 Hz per plane. Each mouse had 4 imaging sessions:

1 natural-movie session: 55 movie clips and one repeated test clip. 3 drifting-grating...

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Keywords:
mouse
2-photon calcium imaging
spatial transcriptomics
Visual cortex
drifting gratings
natural movies
multi-plane imaging
pan-neuronal
Subject matter:
primary visual cortex
Contributors
Arkhipov, Anton ORCID logo
Garret, Marina ORCID logo
Groblewski, Peter
Zobeiri, Omid
Aloi, Macarena
Caldejon, Shiella
Seid, Sam
Willford, Ali
Campos, Jazmin
Berry, Carson
Davis, Matt
Funding information
National Institutes of Health (NIH)
- Award Number: 1 U01 MH 130907-02
Anatomy
primary visual cortex
HTTP: //purl.obolibrary.org/obo/UBERON_0002436
Related resources
dandi-002015-v1-ophys-xenium: helper functions and notebook to read the NWB files
ID: https://github.com/omidzobeiri/dandi-002015-v1-ophys-xenium
Resource Type: dcite:Software
Repo: GitHub
Relation: dcite:IsSupplementedBy
Assets Summary
Number Of Subjects
9
Dandiset Actions
Files
Owners
omidzobeiri
Versions
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