Public Dandisets

Whole-brain spontaneous GCaMP activity with NeuroPAL cell ID information of semi-restricted worms

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DOI: 10.48324/dandi.000692/0.240402.2118
ID: 0006920.240402.2118
Contact Kimura, Koutarou D
File Count 9
Size 75 GiB
Created April 2, 2024
Last update April 2, 2024
Licenses: spdx:CC-BY-4.0
Access Information: dandi:OpenAccess

Spontaneous neuronal activities were extracted from GCaMP and tagRFP images, covering nearly all neurons in the nematode C. elegans brain. Cell segmentation and tracking were performed using 3DeeCellTracker (https://github.com/WenChentao/3DeeCellTracker). Neuronal identity information was derived from NeuroPAL signals with the NeuroPAL Auto-ID software (https://www.yeminilab.com/neuropal) and...

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Contributors
Suzuki, Ryoga
Wen, Chentao ORCID logo
Sprague, Daniel ORCID logo
Onami, Shuichi ORCID logo
Kimura, Koutarou D ORCID logo
Funding information
No funding information available.
Assets Summary
Species
Caenorhabditis elegans
Approach
microscopy approach; cell population imaging
Data Standard
Neurodata Without Borders (NWB)
RRID:SCR_015242
Number Of Subjects
9
Variable Measured
PlaneSegmentation
ProcessingModule
Measurement Technique
analytical technique
Dandiset Actions
Files
Owners
Yutaka Sprague
KoKimuraNagoya
Versions
0.240402.2118
Apr 2, 2024