Public Dandisets

Two-photon calcium imaging of mouse posterior cortical areas during dynamic navigation decisions (Tseng et al., 2022, Neuron)

1
DOI: 10.48324/dandi.000579/0.230728.1727
ID: 0005790.230728.1727
Contact Tseng, Shih-Yi
File Count 308
Size 228.7 GiB
Created July 28, 2023
Last update July 28, 2023
Licenses: spdx:CC-BY-4.0
Access Information: dandi:OpenAccess

This is the dataset for Tseng et al, "Shared and specialized coding across posterior cortical areas for dynamic navigation decisions" in Neuron (2022). The dataset contains calcium activity of >200,000 neurons recorded from 6 different cortical areas in mouse posterior cortex L2/3 and L5 using two-photon imaging, including V1 and secondary visual areas, retrosplenial cortex (RSC) and posterior...

[ + see more ]
Keywords:
mouse
cortex
decision-making
navigation
virtual reality
two-photon imaging
posterior cortex
posterior parietal cortex
retrosplenial cortex
visual cortex
rule-switching
flexible decisions
retrograde labeling
Contributors
Tseng, Shih-Yi ORCID logo
Chettih, Selmaan ORCID logo
Harvey, Christopher ORCID logo
Funding information
National Institutes of Health Director’s Pioneer Award
- Award Number: DP1 MH125776
National Institute of Neurological Disorders and Stroke
- Award Number: R01 NS089521
National Institute of Mental Health
- Award Number: R01 MH107620
National Institutes of Health BRAIN Initiative
- Award Number: R01 NS108410
Related resources
Shared and specialized coding across posterior cortical areas for dynamic navigation decisions
ID: Original paper
Relation: dcite:IsPublishedIn
Github repository for NWB file reading tutorial notebook
ID: Data loading tutorial
Repo: Notebook_for_Dandiset_000579
Relation: dcite:IsDocumentedBy
Github repository for NWB extension code for custom lab meta data
ID: NWB extension for lab meta data
Repo: ndx-harvey-swac
Relation: dcite:IsSupplementedBy
Code and tutorials for fitting neural activity with GLM in Tensorflow 2
ID: GLM code in Tensorflow 2
Repo: GLM_Tensorflow_2
Relation: dcite:IsContinuedBy
Assets Summary
Species
Mus musculus - House mouse
Approach
microscopy approach; cell population imaging
behavioral approach
Data Standard
Neurodata Without Borders (NWB)
RRID:SCR_015242
Number Of Subjects
8
Variable Measured
ImagingPlane
ProcessingModule
OpticalChannel
Position
SpatialSeries
BehavioralTimeSeries
PlaneSegmentation
Measurement Technique
surgical technique
analytical technique
behavioral technique
Dandiset Actions
Files
Owners
Shih-Yi Tseng
Selmaan
Versions
0.230728.1727
Jul 28, 2023